SNP Report

Basic Infomation

Name	rs12777577 dbSNP
Location	chr:10,82343793
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186148	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs11186151	0.99[ASN][1000 genomes]
rs12259358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12268524	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12572336	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12767460	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12773027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107222	0.85[CHD][hapmap];0.90[JPT][hapmap]
rs1913756	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913758	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913759	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913760	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34215840	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34279451	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35154155	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976818	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36095216	0.92[ASN][1000 genomes]
rs4348832	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs60390678	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586086	0.90[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586087	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586088	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6586090	0.94[ASN][1000 genomes]
rs7067623	0.98[ASN][1000 genomes]
rs7072046	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7072057	0.85[ASN][1000 genomes]
rs7072467	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081555	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7081964	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082413	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091134	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092045	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092609	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7100769	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894899	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs7897591	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909966	1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917014	0.90[JPT][hapmap]
rs7920037	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)