SNP Report
Basic Infomation
| Name | rs11186029 dbSNP |
|---|---|
| Location | chr:10,82315290 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11185932 | 0.81[CHB][hapmap];0.80[JPT][hapmap] |
| rs11186047 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11186133 | 1.00[YRI][hapmap] |
| rs11186146 | 1.00[YRI][hapmap] |
| rs11186202 | 1.00[YRI][hapmap] |
| rs12250562 | 1.00[YRI][hapmap] |
| rs12257493 | 1.00[YRI][hapmap] |
| rs12262853 | 1.00[YRI][hapmap] |
| rs12267227 | 0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12269602 | 1.00[YRI][hapmap] |
| rs12412927 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12571173 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1902659 | 0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2880648 | 0.88[YRI][hapmap] |
| rs4933445 | 0.81[EUR][1000 genomes] |
| rs9665686 | 0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | Distal transcriptional regulation |
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014