SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 6)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186029	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs12412927	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1902659	0.80[JPT][hapmap]
rs2138285	0.83[CEU][hapmap]
rs873258	0.82[CEU][hapmap]
rs9665686	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.85[MKK][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SH2D4B	Proximal transcriptional regulation
TSPAN14	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
PHC2	SCAN
C10orf11	SCAN