SNP Report
Basic Infomation
| Name | rs274557 dbSNP |
|---|---|
| Location | chr:5,131721204 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 75)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050150 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11242110 | 0.84[CHD][hapmap] |
| rs149218 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs156322 | 0.86[MKK][hapmap] |
| rs17165928 | 0.83[JPT][hapmap] |
| rs183894 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2516788 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2569265 | 0.86[MKK][hapmap] |
| rs2569266 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2631361 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2631363 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2631365 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2631370 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2631372 | 0.86[MKK][hapmap] |
| rs270601 | 0.88[MKK][hapmap] |
| rs270602 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs270605 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs270606 | 0.82[MKK][hapmap] |
| rs270613 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs272842 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs272849 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs272852 | 0.90[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs272860 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272865 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272866 | 0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs272867 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.97[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272869 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs272871 | 0.88[ASN][1000 genomes] |
| rs272872 | 0.86[MKK][hapmap] |
| rs272873 | 0.83[JPT][hapmap] |
| rs272874 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs272875 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272878 | 0.86[MKK][hapmap] |
| rs272881 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272882 | 0.85[MKK][hapmap] |
| rs272883 | 0.86[MKK][hapmap] |
| rs272884 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272885 | 0.86[MKK][hapmap] |
| rs272886 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272887 | 0.85[MKK][hapmap] |
| rs272888 | 0.86[MKK][hapmap] |
| rs272889 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs272892 | 0.86[MKK][hapmap] |
| rs272893 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs272894 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs273897 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs273900 | 0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs273901 | 0.86[MKK][hapmap] |
| rs273902 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs273912 | 0.82[MKK][hapmap] |
| rs273913 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs273914 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274546 | 0.91[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274555 | 0.83[CEU][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.81[EUR][1000 genomes] |
| rs274558 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs274559 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs274560 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274561 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274562 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274563 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs274565 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs274566 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs274567 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274568 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3761660 | 0.83[JPT][hapmap] |
| rs3792892 | 0.83[JPT][hapmap] |
| rs3828671 | 0.83[JPT][hapmap] |
| rs419291 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap] |
| rs441969 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4475253 | 0.81[CHB][hapmap] |
| rs4705933 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs610735 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs611084 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs671473 | 0.80[MKK][hapmap] |
| rs886285 | 0.82[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A5 | Proximal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| SLC22A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014