SNP Report
Name | rs272860   dbSNP |
---|---|
Location | chr:5,131684175 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1050150 | 0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs149218 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17165928 | 0.83[JPT][hapmap] |
rs183894 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2516788 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2569266 | 0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2631361 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2631363 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2631365 | 0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2631370 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs270602 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs270605 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs270613 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs272842 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs272849 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs272852 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs272863 | 0.81[ASN][1000 genomes] |
rs272865 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272866 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs272867 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272869 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272871 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272873 | 0.83[JPT][hapmap] |
rs272874 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272875 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272881 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272884 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272886 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs272889 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272893 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272894 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs273897 | 0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs273900 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs273902 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs273913 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs273914 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274546 | 0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs274555 | 0.83[CEU][hapmap] |
rs274557 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274558 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274559 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274560 | 0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs274561 | 0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs274562 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs274563 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs274565 | 0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs274566 | 0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs274567 | 0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs274568 | 0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs3761660 | 0.83[JPT][hapmap] |
rs3792892 | 0.83[JPT][hapmap] |
rs3828671 | 0.83[JPT][hapmap] |
rs419291 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs441969 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4475253 | 0.81[CHB][hapmap] |
rs4705933 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs610735 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs611084 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs886285 | 0.81[CHB][hapmap] |
Symbol | Regulation type |
---|---|
ENSG00000233006 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014