SNP Report
Basic Infomation
| Name | rs272884 dbSNP |
|---|---|
| Location | chr:5,131668654 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 59)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050150 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs149218 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17165928 | 0.83[JPT][hapmap] |
| rs183894 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2516788 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2569266 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2631361 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2631363 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2631365 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2631370 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs270602 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs270605 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270613 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs272842 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs272849 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs272852 | 0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs272860 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs272863 | 0.84[ASN][1000 genomes] |
| rs272865 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs272866 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs272867 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs272869 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272871 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs272873 | 0.83[JPT][hapmap] |
| rs272874 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272875 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs272881 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs272886 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs272889 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs272893 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs272894 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs273897 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs273900 | 0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs273902 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs273913 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs273914 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs274546 | 0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs274555 | 0.83[CEU][hapmap] |
| rs274557 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs274558 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs274559 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs274560 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs274561 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs274562 | 0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs274563 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs274565 | 0.84[ASN][1000 genomes] |
| rs274566 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs274567 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs274568 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3761660 | 0.83[JPT][hapmap] |
| rs3792892 | 0.83[JPT][hapmap] |
| rs3828671 | 0.83[JPT][hapmap] |
| rs419291 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs441969 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4475253 | 0.82[CHB][hapmap] |
| rs4705933 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs610735 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs611084 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs886285 | 0.82[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Distal transcriptional regulation |
| SLC22A4 | RNA binding protein mediated regulation |
| ENSG00000233006 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014