SNP Report

Basic Infomation

Name	rs2631365 dbSNP
Location	chr:5,131705949
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1050150	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs149218	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs183894	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2516788	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2569266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2631361	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2631363	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2631370	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270602	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270605	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270613	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs272842	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272849	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs272852	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs272860	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272863	0.81[ASN][1000 genomes]
rs272865	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272866	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272867	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272869	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs272871	0.87[ASN][1000 genomes]
rs272874	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs272875	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272881	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272884	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272886	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs272889	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs272893	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs272894	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs273897	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273900	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs273902	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273913	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs273914	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs274546	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274560	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274561	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274562	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274563	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs274565	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs274566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs274567	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs441969	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705933	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs610735	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs611084	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC22A5	Proximal transcriptional regulation
ENSG00000233006	Proximal transcriptional regulation
MIR3936	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)