SNP Report
Name | rs1050150   dbSNP |
---|---|
Location | chr:5,131670546 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs149218 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs183894 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2516788 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2569266 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2631361 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2631363 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2631365 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2631370 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs270602 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs270605 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs270613 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs272842 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272849 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272852 | 0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs272860 | 0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs272863 | 0.83[ASN][1000 genomes] |
rs272865 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs272866 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs272867 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs272869 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs272871 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272874 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs272875 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs272881 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs272884 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs272886 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs272889 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs272893 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272894 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs273897 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs273900 | 0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs273902 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs273913 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs273914 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs274546 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs274557 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274558 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274559 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs274560 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs274561 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs274562 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs274563 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs274565 | 0.83[ASN][1000 genomes] |
rs274566 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs274567 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs274568 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs441969 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4705933 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs610735 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs611084 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
IL3 | Distal transcriptional regulation |
SLC22A4 | RNA binding protein mediated regulation |
ENSG00000233006 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014