SNP Report

Basic Infomation

Name	rs274561 dbSNP
Location	chr:5,131719228
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 62)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1050150	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs149218	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17165928	0.83[JPT][hapmap]
rs183894	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2516788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2569266	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631361	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631362	0.82[MKK][hapmap]
rs2631363	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631365	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2631370	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs270605	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs270606	0.82[MKK][hapmap]
rs270613	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs272842	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs272849	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs272852	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs272860	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272863	0.86[ASN][1000 genomes]
rs272865	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272866	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs272867	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs272871	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272873	0.83[JPT][hapmap]
rs272874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs272875	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272880	0.82[MKK][hapmap]
rs272881	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272884	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272886	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs272889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs272894	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs273897	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs273900	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs273902	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs273912	0.82[MKK][hapmap]
rs273913	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs273914	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs274546	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274557	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274558	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274559	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274560	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274563	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274565	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs274566	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs274567	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs274568	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs274570	0.88[MKK][hapmap]
rs3761660	0.83[JPT][hapmap]
rs3792892	0.83[JPT][hapmap]
rs3828671	0.83[JPT][hapmap]
rs419291	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.84[YRI][hapmap]
rs441969	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705933	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs610735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs611084	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671473	0.83[MKK][hapmap]

rSNP related genes

Symbol	Regulation type
SLC22A5	Proximal transcriptional regulation
ENSG00000233006	Distal transcriptional regulation
SLC22A5	Distal transcriptional regulation
IRF1	Distal transcriptional regulation
C5orf56	Distal transcriptional regulation
P4HA2	Distal transcriptional regulation
SLC22A4	Distal transcriptional regulation
SLC22A5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 8)

eQTL related gene	Source
C19orf20	SCAN
P4HA2	seeQTL
SLC22A4	Pritchard
SLC22A5	Pritchard
SLC22A5	SCAN
P4HA2	SCAN
FSTL4	SCAN
CDKL3	SCAN