SNP Report
Name | rs3761660   dbSNP |
---|---|
Location | chr:5,131628565 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs12652141 | 1.00[CEU][hapmap] |
rs12659233 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
rs13166346 | 1.00[CEU][hapmap] |
rs17165928 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2631370 | 0.83[JPT][hapmap] |
rs270605 | 0.83[JPT][hapmap] |
rs270613 | 0.83[JPT][hapmap] |
rs272842 | 0.83[JPT][hapmap] |
rs272860 | 0.83[JPT][hapmap] |
rs272865 | 0.82[JPT][hapmap] |
rs272873 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs272875 | 0.83[JPT][hapmap] |
rs272881 | 0.83[JPT][hapmap] |
rs272884 | 0.83[JPT][hapmap] |
rs272886 | 0.83[JPT][hapmap] |
rs272890 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs272894 | 0.83[JPT][hapmap] |
rs273914 | 0.81[JPT][hapmap] |
rs274546 | 0.83[JPT][hapmap] |
rs274557 | 0.83[JPT][hapmap] |
rs274558 | 0.83[JPT][hapmap] |
rs274559 | 0.83[JPT][hapmap] |
rs274560 | 0.83[JPT][hapmap] |
rs274561 | 0.83[JPT][hapmap] |
rs274562 | 0.83[JPT][hapmap] |
rs274567 | 0.83[JPT][hapmap] |
rs34376246 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs35792621 | 0.90[ASN][1000 genomes] |
rs3792892 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3828671 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs419291 | 0.83[JPT][hapmap] |
rs420992 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4705859 | 1.00[CEU][hapmap] |
rs4705861 | 1.00[CEU][hapmap] |
rs4705933 | 0.83[JPT][hapmap] |
rs4705942 | 0.90[ASN][1000 genomes] |
rs4705944 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
rs4705945 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
rs757103 | 1.00[CEU][hapmap] |
Symbol | Regulation type |
---|---|
SLC22A4 | Proximal transcriptional regulation |
PDLIM4 | Distal transcriptional regulation |
P4HA2 | Distal transcriptional regulation |
C5orf56 | Distal transcriptional regulation |
ENSG00000224015 | Distal transcriptional regulation |
ENSG00000233006 | Distal transcriptional regulation |
SLC22A5 | Distal transcriptional regulation |
MIR3936 | Distal transcriptional regulation |
P4HA2 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
SLC22A5 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014