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rVarBase
SNP Report
Basic Infomation
Name
rs272890  
dbSNP
Location
chr:5,131664576
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17165928
0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs272873
0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34376246
0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35792621
0.86[ASN][1000 genomes]
rs3761660
0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3792892
0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3828671
0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs420992
0.92[ASN][1000 genomes]
rs4705942
0.86[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC22A4
RNA binding protein mediated regulation
ENSG00000233006
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)