SNP Report
Basic Infomation
| Name | rs419291 dbSNP |
|---|---|
| Location | chr:5,131633355 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs156322 | 0.84[MKK][hapmap] |
| rs17165928 | 0.83[JPT][hapmap] |
| rs2569265 | 0.84[MKK][hapmap] |
| rs2631362 | 0.85[MKK][hapmap] |
| rs2631370 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap] |
| rs2631372 | 0.83[MKK][hapmap] |
| rs270601 | 0.85[MKK][hapmap] |
| rs270602 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap] |
| rs270605 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap] |
| rs270606 | 0.89[MKK][hapmap] |
| rs270613 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap] |
| rs272842 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap] |
| rs272860 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs272865 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs272867 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap] |
| rs272869 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap] |
| rs272872 | 0.84[MKK][hapmap] |
| rs272873 | 0.83[JPT][hapmap] |
| rs272874 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap] |
| rs272875 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap] |
| rs272878 | 0.84[MKK][hapmap] |
| rs272880 | 0.86[MKK][hapmap] |
| rs272881 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap] |
| rs272882 | 0.83[MKK][hapmap] |
| rs272883 | 0.84[MKK][hapmap] |
| rs272884 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs272885 | 0.84[MKK][hapmap] |
| rs272886 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap] |
| rs272887 | 0.82[MKK][hapmap] |
| rs272888 | 0.84[MKK][hapmap] |
| rs272889 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap] |
| rs272892 | 0.84[MKK][hapmap] |
| rs272893 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap] |
| rs272894 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap] |
| rs273901 | 0.84[MKK][hapmap] |
| rs273912 | 0.89[MKK][hapmap] |
| rs273913 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap] |
| rs273914 | 0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs274546 | 0.85[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs274557 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap] |
| rs274558 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap] |
| rs274559 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap] |
| rs274560 | 0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap] |
| rs274561 | 0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.84[YRI][hapmap] |
| rs274562 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap] |
| rs274567 | 0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap] |
| rs274570 | 0.83[MKK][hapmap] |
| rs3761660 | 0.83[JPT][hapmap] |
| rs3792892 | 0.83[JPT][hapmap] |
| rs3828671 | 0.83[JPT][hapmap] |
| rs4705933 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs671473 | 0.87[MKK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| P4HA2 | Proximal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| SLC22A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014