SNP Report
Name | rs2631372   dbSNP |
---|---|
Location | chr:5,131703578 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1016988 | 0.85[CHB][hapmap] |
rs156322 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs156403 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs162887 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1644283 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs166635 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs183898 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs200837 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2569265 | 0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2631359 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2631362 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2631364 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2631368 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2631369 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2631370 | 0.89[MKK][hapmap] |
rs2631371 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs270601 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs270602 | 0.89[MKK][hapmap] |
rs270603 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs270605 | 0.89[MKK][hapmap] |
rs270606 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs270607 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs270608 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs270612 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs270613 | 0.83[MKK][hapmap] |
rs270614 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs270615 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272842 | 0.89[MKK][hapmap] |
rs272850 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs272851 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs272859 | 0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs272861 | 0.81[YRI][hapmap] |
rs272867 | 0.89[MKK][hapmap] |
rs272868 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272869 | 0.89[MKK][hapmap] |
rs272870 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272872 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272874 | 0.89[MKK][hapmap] |
rs272875 | 0.86[MKK][hapmap] |
rs272877 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272878 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272880 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MKK][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272881 | 0.89[MKK][hapmap] |
rs272882 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs272883 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272885 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272886 | 0.89[MKK][hapmap] |
rs272887 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.98[MKK][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272888 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs272889 | 0.89[MKK][hapmap] |
rs272891 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272892 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs272893 | 0.89[MKK][hapmap] |
rs272894 | 0.89[MKK][hapmap] |
rs273899 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs273901 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs273903 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs273911 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs273912 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MKK][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs273913 | 0.89[MKK][hapmap] |
rs273915 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs273916 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs273917 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs274546 | 0.89[MKK][hapmap] |
rs274556 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs274557 | 0.86[MKK][hapmap] |
rs274558 | 0.86[MKK][hapmap] |
rs274559 | 0.86[MKK][hapmap] |
rs274560 | 0.86[MKK][hapmap] |
rs274564 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs274567 | 0.89[MKK][hapmap] |
rs274570 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.88[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs274571 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs274572 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs367805 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs388891 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs419291 | 0.83[MKK][hapmap] |
rs460089 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs460271 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs581968 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs582490 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs635619 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs635620 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs671473 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.93[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs682821 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7704457 | 0.85[CHB][hapmap] |
Symbol | Regulation type |
---|---|
SLC22A5 | Proximal transcriptional regulation |
MIR3936 | Proximal transcriptional regulation |
IRF1 | Distal transcriptional regulation |
P4HA2 | Distal transcriptional regulation |
SLC22A4 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014