SNP Report
Basic Infomation
| Name | rs460089 dbSNP |
|---|---|
| Location | chr:5,131629772 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 60)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs156322 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs162887 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1644283 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs166635 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs183898 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs200837 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2569265 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2631359 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2631362 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2631364 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2631368 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2631369 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2631371 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2631372 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs270601 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270603 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270606 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270607 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270608 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270612 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270614 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs270615 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs272850 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs272851 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs272859 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs272868 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272870 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272872 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272877 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs272878 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272880 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272882 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs272883 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs272885 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272887 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272888 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs272891 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs272892 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs273899 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs273901 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs273903 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs273911 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs273912 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs273915 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs273916 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs273917 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs274556 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs274564 | 0.81[EUR][1000 genomes] |
| rs274570 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs274571 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs274572 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs367805 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs388891 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs460271 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs581968 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs582490 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs635619 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs635620 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs671473 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs682821 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | Proximal transcriptional regulation |
| GPSM2 | Distal transcriptional regulation |
| INTS7 | Distal transcriptional regulation |
| DTL | Distal transcriptional regulation |
| SNORD25 | Distal transcriptional regulation |
| SNHG1 | Distal transcriptional regulation |
| SLC3A2 | Distal transcriptional regulation |
| BRD2 | Distal transcriptional regulation |
| ENSG00000263756 | Distal transcriptional regulation |
| AHI1 | Distal transcriptional regulation |
| LINC00271 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| ENSG00000253067 | Distal transcriptional regulation |
| ENSG00000224015 | Distal transcriptional regulation |
| PDLIM4 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| LINC00476 | Distal transcriptional regulation |
| ERCC6L2 | Distal transcriptional regulation |
| NFKBIZ | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014