SNP Report
Basic Infomation
| Name | rs1016988 dbSNP |
|---|---|
| Location | chr:5,131744574 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 53)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1003533 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1012793 | 0.91[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs10900807 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11242113 | 0.87[EUR][1000 genomes] |
| rs156322 | 0.85[CHB][hapmap] |
| rs17689595 | 0.90[CEU][hapmap];0.90[TSI][hapmap] |
| rs17771891 | 0.86[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs183898 | 0.84[CHB][hapmap];0.85[YRI][hapmap] |
| rs1981524 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2057655 | 0.84[CEU][hapmap] |
| rs2106854 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2405528 | 0.84[CEU][hapmap] |
| rs2522047 | 0.84[CEU][hapmap] |
| rs2522050 | 0.84[CEU][hapmap] |
| rs2522054 | 0.84[CEU][hapmap] |
| rs2522056 | 0.84[CEU][hapmap] |
| rs2522062 | 0.84[CEU][hapmap] |
| rs2522063 | 0.84[CEU][hapmap] |
| rs2522064 | 0.84[CEU][hapmap] |
| rs2569265 | 0.85[CHB][hapmap] |
| rs2631362 | 0.85[CHB][hapmap] |
| rs2631372 | 0.85[CHB][hapmap] |
| rs270601 | 0.85[CHB][hapmap] |
| rs270606 | 0.85[CHB][hapmap] |
| rs270607 | 0.85[CHB][hapmap] |
| rs2706339 | 0.90[CEU][hapmap] |
| rs2706373 | 0.84[CEU][hapmap] |
| rs2706379 | 0.84[CEU][hapmap] |
| rs2706381 | 0.84[CEU][hapmap] |
| rs2706383 | 0.84[CEU][hapmap] |
| rs2706395 | 0.83[CEU][hapmap] |
| rs272868 | 0.85[CHB][hapmap] |
| rs272872 | 0.85[CHB][hapmap] |
| rs272878 | 0.85[CHB][hapmap] |
| rs272880 | 0.85[CHB][hapmap] |
| rs272882 | 0.84[CHB][hapmap] |
| rs272883 | 0.85[CHB][hapmap] |
| rs272885 | 0.85[CHB][hapmap] |
| rs272887 | 0.85[CHB][hapmap] |
| rs272888 | 0.90[CHB][hapmap] |
| rs272892 | 0.85[CHB][hapmap] |
| rs273901 | 0.85[CHB][hapmap] |
| rs273911 | 0.85[CHB][hapmap] |
| rs273912 | 0.85[CHB][hapmap] |
| rs273915 | 0.85[CHB][hapmap] |
| rs274570 | 0.85[CHB][hapmap] |
| rs62385693 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs671473 | 0.80[CHB][hapmap] |
| rs6874639 | 0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap] |
| rs757105 | 0.84[CEU][hapmap] |
| rs7704457 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7730247 | 0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs886286 | 0.84[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014