SNP Report
Basic Infomation
| Name | rs17689595 dbSNP |
|---|---|
| Location | chr:5,131732774 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1003533 | 0.81[CEU][hapmap];0.91[TSI][hapmap] |
| rs1012793 | 0.81[CEU][hapmap] |
| rs1016988 | 0.90[CEU][hapmap];0.90[TSI][hapmap] |
| rs10900807 | 0.81[CEU][hapmap] |
| rs17771891 | 0.90[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs1981524 | 0.81[CEU][hapmap] |
| rs2106854 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs2706339 | 0.89[CEU][hapmap] |
| rs272895 | 1.00[CHB][hapmap] |
| rs62384157 | 0.85[EUR][1000 genomes] |
| rs6874639 | 0.81[CEU][hapmap] |
| rs7704457 | 0.90[CEU][hapmap];0.91[TSI][hapmap] |
| rs7730247 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014