SNP Report
Basic Infomation
| Name | rs1003533 dbSNP |
|---|---|
| Location | chr:5,131755651 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012793 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes] |
| rs1016988 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10900807 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11242113 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17689595 | 0.81[CEU][hapmap];0.91[TSI][hapmap] |
| rs17771891 | 0.91[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs1981524 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2057655 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2106854 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2405528 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2522047 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2522050 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2522054 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2522056 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2522061 | 0.81[EUR][1000 genomes] |
| rs2522062 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2522063 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2522064 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2706339 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2706373 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2706379 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2706381 | 0.92[CEU][hapmap] |
| rs2706383 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2706393 | 0.81[EUR][1000 genomes] |
| rs2706395 | 0.91[CEU][hapmap] |
| rs62385693 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6874639 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs757105 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs7704457 | 0.91[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7730247 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs886286 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IRF1 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| ENSG00000202533 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| TBX2 | Distal transcriptional regulation |
| ENSG00000267131 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
| ENSG00000238160 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014