SNP Report
Basic Infomation
| Name | rs17771891 dbSNP |
|---|---|
| Location | chr:5,131744202 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1003533 | 0.91[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs1012793 | 0.91[CEU][hapmap] |
| rs1016988 | 0.86[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10900807 | 0.91[CEU][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11242113 | 0.85[EUR][1000 genomes] |
| rs17689595 | 0.90[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs183898 | 0.85[YRI][hapmap] |
| rs1981524 | 0.91[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs2057655 | 0.84[CEU][hapmap] |
| rs2106854 | 0.91[CEU][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs2405528 | 0.84[CEU][hapmap] |
| rs2522047 | 0.84[CEU][hapmap] |
| rs2522050 | 0.84[CEU][hapmap] |
| rs2522054 | 0.84[CEU][hapmap] |
| rs2522056 | 0.84[CEU][hapmap] |
| rs2522062 | 0.84[CEU][hapmap] |
| rs2522063 | 0.84[CEU][hapmap] |
| rs2522064 | 0.84[CEU][hapmap] |
| rs2706339 | 0.90[CEU][hapmap] |
| rs2706373 | 0.84[CEU][hapmap] |
| rs2706379 | 0.84[CEU][hapmap] |
| rs2706381 | 0.84[CEU][hapmap] |
| rs2706383 | 0.84[CEU][hapmap] |
| rs2706395 | 0.83[CEU][hapmap] |
| rs62385693 | 0.86[EUR][1000 genomes] |
| rs6874639 | 0.91[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap] |
| rs757105 | 0.84[CEU][hapmap] |
| rs7704457 | 0.86[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs7730247 | 0.91[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap] |
| rs886286 | 0.84[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| AFF4 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| KIF3A | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014