SNP Report

Basic Infomation

Name	rs6874639 dbSNP
Location	chr:5,131778716
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1003533	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1012793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1016988	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs10900807	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs11242113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17689595	0.81[CEU][hapmap]
rs17771891	0.91[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs1981524	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2057655	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs2106854	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2405528	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2522047	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2522050	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2522054	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs2522056	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs2522060	0.87[EUR][1000 genomes]
rs2522061	0.90[EUR][1000 genomes]
rs2522062	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2522063	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2522064	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2706339	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs2706373	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2706379	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs2706381	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs2706383	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2706393	0.90[EUR][1000 genomes]
rs2706395	0.91[CEU][hapmap];0.90[CHB][hapmap];0.88[EUR][1000 genomes]
rs62385693	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs757105	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs7704457	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs7718024	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7730247	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs886286	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
C5orf56	Distal transcriptional regulation
C5orf56	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
SLC22A4	Pritchard
SLC22A5	Pritchard
TXNDC15	SCAN
FBXL21	SCAN