SNP Report
Basic Infomation
| Name | rs7718024 dbSNP |
|---|---|
| Location | chr:5,131785879 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012793 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11242113 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2057655 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2106854 | 0.84[EUR][1000 genomes] |
| rs2405528 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2522047 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2522050 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2522054 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2522056 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2522060 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2522061 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2522062 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2522063 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2522064 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2706339 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2706373 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2706379 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2706381 | 0.89[EUR][1000 genomes] |
| rs2706383 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2706393 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2706395 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62385693 | 0.84[EUR][1000 genomes] |
| rs6874639 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs757105 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7730247 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs886286 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202533 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014