SNP Report

Basic Infomation

Name	rs12659233 dbSNP
Location	chr:5,131778857
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12652141	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13152879	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13152885	0.97[EUR][1000 genomes]
rs13166346	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17165928	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap]
rs17715199	0.88[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs272873	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap]
rs35180332	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35792621	0.97[EUR][1000 genomes]
rs3761660	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap]
rs3792892	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap]
rs3815065	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828671	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap]
rs420992	0.88[EUR][1000 genomes]
rs4705859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705861	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705942	0.97[EUR][1000 genomes]
rs4705944	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705945	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55864055	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55942909	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56394135	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757103	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9800384	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C5orf56	Distal transcriptional regulation
C5orf56	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)