SNP Report
Basic Infomation
| Name | rs13152885 dbSNP |
|---|---|
| Location | chr:5,131744751 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12652141 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12659233 | 0.97[EUR][1000 genomes] |
| rs13152879 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13166346 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13190001 | 0.95[ASN][1000 genomes] |
| rs17715199 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35180332 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35792621 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3815065 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs420992 | 0.91[EUR][1000 genomes] |
| rs4705859 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4705861 | 1.00[EUR][1000 genomes] |
| rs4705942 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4705944 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4705945 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs55864055 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs55942909 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs56394135 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs757103 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9800384 | 0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014