SNP Report
Basic Infomation
| Name | rs274555 dbSNP |
|---|---|
| Location | chr:5,131722951 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 56)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036896 | 0.83[CHB][hapmap] |
| rs10062371 | 0.91[CHB][hapmap] |
| rs10071051 | 1.00[CHB][hapmap] |
| rs10076701 | 0.81[CEU][hapmap] |
| rs10076733 | 1.00[CHB][hapmap] |
| rs10515456 | 1.00[CHB][hapmap] |
| rs11741543 | 1.00[CHB][hapmap] |
| rs11744116 | 0.91[CHB][hapmap] |
| rs2158101 | 1.00[CHB][hapmap] |
| rs2285673 | 1.00[CHB][hapmap] |
| rs2405522 | 0.91[CHB][hapmap] |
| rs2631370 | 0.83[CEU][hapmap];0.86[LWK][hapmap] |
| rs270602 | 0.84[LWK][hapmap] |
| rs270605 | 0.83[CEU][hapmap];0.86[LWK][hapmap] |
| rs270613 | 0.82[CEU][hapmap] |
| rs272842 | 0.83[CEU][hapmap];0.86[LWK][hapmap] |
| rs272860 | 0.83[CEU][hapmap] |
| rs272865 | 0.83[CEU][hapmap] |
| rs272867 | 0.83[CEU][hapmap];0.83[LWK][hapmap] |
| rs272869 | 0.84[LWK][hapmap] |
| rs272874 | 0.84[LWK][hapmap] |
| rs272875 | 0.83[CEU][hapmap] |
| rs272881 | 0.83[CEU][hapmap];0.86[LWK][hapmap] |
| rs272884 | 0.83[CEU][hapmap] |
| rs272886 | 0.83[CEU][hapmap];0.86[LWK][hapmap] |
| rs272889 | 0.84[LWK][hapmap] |
| rs272893 | 0.84[LWK][hapmap] |
| rs272894 | 0.83[CEU][hapmap];0.86[LWK][hapmap] |
| rs273913 | 0.83[CEU][hapmap] |
| rs274547 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs274548 | 0.91[CHB][hapmap] |
| rs274549 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs274550 | 0.91[CHB][hapmap] |
| rs274551 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs274552 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs274553 | 1.00[CHB][hapmap] |
| rs274554 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs274557 | 0.83[CEU][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.81[EUR][1000 genomes] |
| rs274558 | 0.83[CEU][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];0.81[EUR][1000 genomes] |
| rs274559 | 0.83[CEU][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];0.81[EUR][1000 genomes] |
| rs274560 | 0.81[MKK][hapmap] |
| rs2897160 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs3792881 | 1.00[CHB][hapmap];0.90[CHD][hapmap] |
| rs3792884 | 1.00[CHB][hapmap];0.90[CHD][hapmap] |
| rs4235801 | 0.91[CHB][hapmap] |
| rs4235802 | 0.91[CHB][hapmap] |
| rs4371745 | 0.91[CHB][hapmap] |
| rs4540166 | 0.91[CHB][hapmap] |
| rs4705933 | 0.83[CEU][hapmap] |
| rs4705941 | 1.00[CHB][hapmap] |
| rs6596075 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs6867325 | 0.83[CHB][hapmap] |
| rs6893782 | 0.91[CHB][hapmap] |
| rs7703152 | 0.91[CHB][hapmap] |
| rs7705826 | 0.91[CHB][hapmap] |
| rs7727544 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A5 | Proximal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| ENSG00000230612 | Distal transcriptional regulation |
| RNA5SP192 | Distal transcriptional regulation |
| SLC22A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014