SNP Report
Basic Infomation
| Name | rs4235801 dbSNP |
|---|---|
| Location | chr:5,131782444 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036896 | 0.89[CEU][hapmap];0.92[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10039559 | 0.84[CEU][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10060626 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10062371 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10067603 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10069798 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10071051 | 0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10076733 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10077785 | 0.84[CEU][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1012794 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10515456 | 0.91[CHB][hapmap] |
| rs11242112 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11741543 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11743941 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11743947 | 0.81[ASN][1000 genomes] |
| rs11744116 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11747902 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11748326 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2057657 | 0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2079054 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2097731 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2158101 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2285673 | 0.81[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2405522 | 0.82[CHB][hapmap] |
| rs274547 | 0.91[CHB][hapmap] |
| rs274548 | 0.82[CHB][hapmap] |
| rs274549 | 0.91[CHB][hapmap] |
| rs274550 | 0.82[CHB][hapmap] |
| rs274551 | 0.91[CHB][hapmap] |
| rs274552 | 0.91[CHB][hapmap] |
| rs274553 | 0.91[CHB][hapmap] |
| rs274554 | 0.91[CHB][hapmap] |
| rs274555 | 0.91[CHB][hapmap] |
| rs28655019 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2897160 | 0.91[CHB][hapmap] |
| rs3792881 | 0.91[CHB][hapmap] |
| rs3792884 | 0.91[CHB][hapmap] |
| rs3846729 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs3846730 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs3857440 | 0.81[TSI][hapmap] |
| rs4235802 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4371745 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4540166 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4643947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4705941 | 0.91[CHB][hapmap] |
| rs59041913 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6596075 | 0.91[CHB][hapmap] |
| rs6867325 | 0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6868372 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs6893782 | 0.82[CHB][hapmap] |
| rs7703152 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7705826 | 0.82[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202533 | Distal transcriptional regulation |
| ENSG00000238160 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014