SNP Report
Basic Infomation
| Name | rs6868372 dbSNP |
|---|---|
| Location | chr:5,131784583 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036896 | 0.80[ASN][1000 genomes] |
| rs10062371 | 0.82[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs10071051 | 1.00[JPT][hapmap] |
| rs10076733 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1012794 | 0.91[ASN][1000 genomes] |
| rs11242112 | 0.82[ASN][1000 genomes] |
| rs11741543 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11743941 | 0.91[ASN][1000 genomes] |
| rs11744116 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs11747902 | 0.91[ASN][1000 genomes] |
| rs12655512 | 0.80[CEU][hapmap] |
| rs2158101 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2285673 | 1.00[JPT][hapmap] |
| rs2522043 | 0.80[CEU][hapmap] |
| rs2522044 | 0.80[CEU][hapmap] |
| rs2706387 | 0.80[CEU][hapmap] |
| rs28655019 | 0.90[ASN][1000 genomes] |
| rs4235801 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4235802 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4371745 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4475253 | 0.83[CEU][hapmap] |
| rs4504381 | 0.84[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs4540166 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4643947 | 0.91[ASN][1000 genomes] |
| rs6867325 | 1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs726923 | 0.86[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs7703152 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7703230 | 0.82[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs886285 | 0.83[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202533 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014