SNP Report
Name | rs11747902   dbSNP |
---|---|
Location | chr:5,131783715 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10036896 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10039559 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10060626 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs10062371 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10067603 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10069798 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10071051 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10076733 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10077785 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1012794 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11242112 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11741543 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11743941 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11743947 | 0.81[ASN][1000 genomes] |
rs11744116 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11748326 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2057657 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2079054 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2097731 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2158101 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2285673 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs28655019 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3846729 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs3846730 | 0.86[EUR][1000 genomes] |
rs4235801 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4235802 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4371745 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4540166 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4643947 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59041913 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6867325 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6868372 | 0.91[ASN][1000 genomes] |
rs7703152 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000202533 | Distal transcriptional regulation |
IRF1 | Distal transcriptional regulation |
C5orf56 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014