SNP Report
Name | rs3846730   dbSNP |
---|---|
Location | chr:5,131806780 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10036896 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
rs10039559 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10060626 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10062371 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
rs10067603 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10069798 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10076733 | 0.84[CEU][hapmap];0.83[EUR][1000 genomes] |
rs10077785 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1012794 | 0.86[EUR][1000 genomes] |
rs11242112 | 0.84[EUR][1000 genomes] |
rs11741543 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
rs11743941 | 0.85[EUR][1000 genomes] |
rs11744116 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
rs11747902 | 0.86[EUR][1000 genomes] |
rs11748326 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2057656 | 0.86[CEU][hapmap];0.80[EUR][1000 genomes] |
rs2057657 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2158101 | 0.85[CEU][hapmap];0.85[EUR][1000 genomes] |
rs2548992 | 0.86[CEU][hapmap] |
rs2548993 | 0.86[CEU][hapmap] |
rs28655019 | 0.85[EUR][1000 genomes] |
rs3846729 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3857440 | 0.86[CEU][hapmap] |
rs4235801 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4235802 | 0.85[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4371745 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4540166 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4643947 | 0.86[EUR][1000 genomes] |
rs59041913 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6867325 | 0.86[EUR][1000 genomes] |
rs7703152 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
IRF1 | Distal transcriptional regulation |
ENSG00000202533 | Distal transcriptional regulation |
C5orf56 | RNA binding protein mediated regulation |
ENSG00000234290 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014