SNP Report
Name | rs10060626   dbSNP |
---|---|
Location | chr:5,131803967 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10036896 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10039559 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10062371 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10067603 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10069798 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10071051 | 0.81[AMR][1000 genomes] |
rs10076733 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10077785 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1012794 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs11242112 | 0.82[EUR][1000 genomes] |
rs11741543 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11743941 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11744116 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs11747902 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs11748326 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2057657 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2079054 | 0.81[AMR][1000 genomes] |
rs2097731 | 0.81[AMR][1000 genomes] |
rs2158101 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs2285673 | 0.81[AMR][1000 genomes] |
rs28655019 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs3846729 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3846730 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4235801 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4235802 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4371745 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4540166 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4643947 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs59041913 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6867325 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs7703152 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
C5orf56 | Proximal transcriptional regulation |
IRF1 | Distal transcriptional regulation |
C5orf56 | Distal transcriptional regulation |
ENSG00000234290 | Distal transcriptional regulation |
C5orf56 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014