SNP Report
Basic Infomation
| Name | rs10039559 dbSNP |
|---|---|
| Location | chr:5,131804507 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036896 | 0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10060626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10062371 | 0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10067603 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10069798 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10071051 | 0.82[ASW][hapmap];0.81[AMR][1000 genomes] |
| rs10076733 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10077785 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1012794 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11242112 | 0.84[EUR][1000 genomes] |
| rs11739623 | 1.00[YRI][hapmap] |
| rs11741543 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11743941 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11744116 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11747902 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11748326 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17715481 | 1.00[YRI][hapmap] |
| rs17772583 | 1.00[YRI][hapmap] |
| rs2057656 | 0.85[CEU][hapmap] |
| rs2057657 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2079054 | 0.81[AMR][1000 genomes] |
| rs2097731 | 0.81[AMR][1000 genomes] |
| rs2158101 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2285673 | 0.81[AMR][1000 genomes] |
| rs2548992 | 0.86[CEU][hapmap] |
| rs2548993 | 0.86[CEU][hapmap] |
| rs28655019 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3792889 | 1.00[YRI][hapmap] |
| rs3846729 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3846730 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3857440 | 0.86[CEU][hapmap];0.81[TSI][hapmap] |
| rs4235801 | 0.84[CEU][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4235802 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4371745 | 0.84[CEU][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4540166 | 0.84[CEU][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4643947 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4705959 | 1.00[YRI][hapmap] |
| rs59041913 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6867325 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7703152 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7706762 | 1.00[YRI][hapmap] |
| rs7706873 | 1.00[YRI][hapmap] |
| rs7723100 | 1.00[YRI][hapmap] |
| rs9687291 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| ENSG00000234290 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014