SNP Report
Basic Infomation
| Name | rs11739623 dbSNP |
|---|---|
| Location | chr:5,131864152 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036896 | 1.00[YRI][hapmap] |
| rs10039559 | 1.00[YRI][hapmap] |
| rs10067603 | 1.00[YRI][hapmap] |
| rs10069798 | 1.00[YRI][hapmap] |
| rs10076733 | 1.00[YRI][hapmap] |
| rs10077785 | 1.00[YRI][hapmap] |
| rs11740965 | 0.80[JPT][hapmap] |
| rs11741543 | 1.00[YRI][hapmap] |
| rs11744116 | 1.00[YRI][hapmap] |
| rs17715481 | 1.00[YRI][hapmap] |
| rs17772583 | 0.92[MEX][hapmap];1.00[YRI][hapmap] |
| rs2057657 | 1.00[YRI][hapmap] |
| rs2158101 | 1.00[YRI][hapmap] |
| rs3792889 | 1.00[YRI][hapmap] |
| rs3846729 | 1.00[YRI][hapmap] |
| rs4705959 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57896917 | 0.99[EUR][1000 genomes] |
| rs6887731 | 0.98[EUR][1000 genomes] |
| rs72797327 | 0.89[EUR][1000 genomes] |
| rs7706873 | 1.00[YRI][hapmap] |
| rs7723100 | 1.00[YRI][hapmap] |
| rs9687291 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SEPT8 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014