SNP Report
Name | rs10067603   dbSNP |
---|---|
Location | chr:5,131803868 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10036896 | 0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10039559 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10060626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10062371 | 0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10069798 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10071051 | 0.81[AMR][1000 genomes] |
rs10076733 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10077785 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1012794 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11242112 | 0.84[EUR][1000 genomes] |
rs11739623 | 1.00[YRI][hapmap] |
rs11741543 | 0.85[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11743941 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11744116 | 0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11747902 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11748326 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs17715481 | 1.00[YRI][hapmap] |
rs17772583 | 1.00[YRI][hapmap] |
rs2057656 | 0.86[CEU][hapmap] |
rs2057657 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2079054 | 0.81[AMR][1000 genomes] |
rs2097731 | 0.81[AMR][1000 genomes] |
rs2158101 | 0.85[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2285673 | 0.81[AMR][1000 genomes] |
rs2548992 | 0.86[CEU][hapmap] |
rs2548993 | 0.86[CEU][hapmap] |
rs28655019 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs3792889 | 1.00[YRI][hapmap] |
rs3846729 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3846730 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3857440 | 0.86[CEU][hapmap] |
rs4235801 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4235802 | 0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4371745 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4540166 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4643947 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4705959 | 1.00[YRI][hapmap] |
rs59041913 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6867325 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7703152 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7706762 | 1.00[YRI][hapmap] |
rs7706873 | 1.00[YRI][hapmap] |
rs7723100 | 1.00[YRI][hapmap] |
rs9687291 | 1.00[YRI][hapmap] |
Symbol | Regulation type |
---|---|
C5orf56 | Proximal transcriptional regulation |
IRF1 | Distal transcriptional regulation |
C5orf56 | Distal transcriptional regulation |
ENSG00000234290 | Distal transcriptional regulation |
ENSG00000202533 | RNA binding protein mediated regulation |
C5orf56 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014