SNP Report
Basic Infomation
| Name | rs2548993 dbSNP |
|---|---|
| Location | chr:5,131808869 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036896 | 0.81[CEU][hapmap] |
| rs10039559 | 0.86[CEU][hapmap] |
| rs10059611 | 0.90[JPT][hapmap] |
| rs10067603 | 0.86[CEU][hapmap] |
| rs10069798 | 0.86[CEU][hapmap] |
| rs10077785 | 0.86[CEU][hapmap] |
| rs12655512 | 0.90[JPT][hapmap];0.92[YRI][hapmap] |
| rs2057656 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2057657 | 0.83[CEU][hapmap] |
| rs2252405 | 0.90[JPT][hapmap];0.92[YRI][hapmap] |
| rs2522043 | 0.90[JPT][hapmap];0.92[YRI][hapmap] |
| rs2522044 | 0.90[JPT][hapmap];0.92[YRI][hapmap] |
| rs2522055 | 0.86[ASN][1000 genomes] |
| rs2548992 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2706387 | 0.90[JPT][hapmap];0.92[YRI][hapmap] |
| rs3749833 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3846729 | 0.86[CEU][hapmap] |
| rs3846730 | 0.86[CEU][hapmap] |
| rs3857440 | 0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4504381 | 0.90[JPT][hapmap] |
| rs6866467 | 0.90[JPT][hapmap] |
| rs726923 | 0.89[JPT][hapmap] |
| rs7703230 | 0.90[JPT][hapmap] |
| rs7713065 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7713818 | 0.90[JPT][hapmap];0.92[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000234290 | Proximal transcriptional regulation |
| ENSG00000202533 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014