SNP Report
Basic Infomation
| Name | rs3749833 dbSNP |
|---|---|
| Location | chr:5,131799626 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10059611 | 0.81[ASN][1000 genomes] |
| rs12655512 | 0.82[ASN][1000 genomes] |
| rs12659708 | 0.82[ASN][1000 genomes] |
| rs2057656 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2252405 | 0.82[ASN][1000 genomes] |
| rs2522043 | 0.82[ASN][1000 genomes] |
| rs2522044 | 0.82[ASN][1000 genomes] |
| rs2522055 | 0.86[ASN][1000 genomes] |
| rs2548992 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2548993 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2706387 | 0.82[ASN][1000 genomes] |
| rs3857440 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6865438 | 0.81[ASN][1000 genomes] |
| rs6866467 | 0.81[ASN][1000 genomes] |
| rs7713065 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202533 | Proximal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| ENSG00000234290 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| ENSG00000239642 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014