SNP Report
Basic Infomation
| Name | rs11743947 dbSNP |
|---|---|
| Location | chr:5,131779257 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10062371 | 0.81[ASN][1000 genomes] |
| rs1012794 | 0.81[ASN][1000 genomes] |
| rs10515456 | 0.81[EUR][1000 genomes] |
| rs11743941 | 0.81[ASN][1000 genomes] |
| rs11744116 | 0.81[ASN][1000 genomes] |
| rs11747902 | 0.81[ASN][1000 genomes] |
| rs11748773 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28435738 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34741321 | 0.83[EUR][1000 genomes] |
| rs4235801 | 0.81[ASN][1000 genomes] |
| rs4235802 | 0.81[ASN][1000 genomes] |
| rs4371745 | 0.81[ASN][1000 genomes] |
| rs4540166 | 0.81[ASN][1000 genomes] |
| rs4643947 | 0.81[ASN][1000 genomes] |
| rs58395458 | 0.97[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6867325 | 0.81[ASN][1000 genomes] |
| rs7703152 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014