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rVarBase
SNP Report
Basic Infomation
Name
rs28435738  
dbSNP
Location
chr:5,131759639
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10076733
0.82[ASN][1000 genomes]
rs10515456
1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11741543
0.81[ASN][1000 genomes]
rs11743947
0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11748773
1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158101
0.81[ASN][1000 genomes]
rs28655019
0.81[ASN][1000 genomes]
rs34741321
1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58395458
0.90[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
IRF1
Distal transcriptional regulation
ENSG00000202533
Distal transcriptional regulation
ENSG00000238160
Distal transcriptional regulation
IL4
Distal transcriptional regulation
C5orf56
RNA binding protein mediated regulation
ENSG00000238160
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)