SNP Report
Basic Infomation
| Name | rs34741321 dbSNP |
|---|---|
| Location | chr:5,131717423 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515456 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11743947 | 0.83[EUR][1000 genomes] |
| rs11748773 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13168774 | 0.85[ASN][1000 genomes] |
| rs2405522 | 0.81[ASN][1000 genomes] |
| rs274547 | 0.92[ASN][1000 genomes] |
| rs274548 | 0.92[ASN][1000 genomes] |
| rs274549 | 0.96[ASN][1000 genomes] |
| rs274550 | 0.84[ASN][1000 genomes] |
| rs274551 | 0.96[ASN][1000 genomes] |
| rs274552 | 0.96[ASN][1000 genomes] |
| rs274553 | 0.96[ASN][1000 genomes] |
| rs274554 | 0.96[ASN][1000 genomes] |
| rs28435738 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2897160 | 0.92[ASN][1000 genomes] |
| rs3792881 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3792884 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4705941 | 0.89[ASN][1000 genomes] |
| rs60934439 | 0.85[EUR][1000 genomes] |
| rs6596075 | 0.92[ASN][1000 genomes] |
| rs6893782 | 0.81[ASN][1000 genomes] |
| rs7705826 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A5 | Proximal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| SLC22A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014