SNP Report
Basic Infomation
| Name | rs13168774 dbSNP |
|---|---|
| Location | chr:5,131740656 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515456 | 0.82[ASN][1000 genomes] |
| rs13189284 | 0.81[AFR][1000 genomes] |
| rs2405522 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs274547 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274548 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs274549 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs274550 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs274551 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs274552 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs274553 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs274554 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2897160 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs34741321 | 0.85[ASN][1000 genomes] |
| rs4705941 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6596075 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6893782 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7705826 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A5 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| AFF4 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| KIF3A | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014