SNP Report
Basic Infomation
| Name | rs11242110 dbSNP |
|---|---|
| Location | chr:5,131743777 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2631370 | 0.86[CHD][hapmap] |
| rs270605 | 0.84[CHD][hapmap] |
| rs270613 | 0.80[CHB][hapmap];0.82[CHD][hapmap] |
| rs272842 | 0.84[CHD][hapmap] |
| rs272867 | 0.82[CHD][hapmap] |
| rs272875 | 0.84[CHD][hapmap] |
| rs272881 | 0.84[CHD][hapmap] |
| rs272886 | 0.84[CHD][hapmap] |
| rs272894 | 0.84[CHD][hapmap] |
| rs273913 | 0.84[CHD][hapmap] |
| rs274557 | 0.84[CHD][hapmap] |
| rs274558 | 0.86[CHD][hapmap] |
| rs274559 | 0.84[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| AFF4 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| KIF3A | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014