SNP Report

Basic Infomation

Name	rs2328546 dbSNP
Location	chr:6,20657345
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012625	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1012636	0.82[AMR][1000 genomes]
rs13220352	0.87[ASN][1000 genomes]
rs1569660	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs2064320	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2179551	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2206577	0.84[CHB][hapmap]
rs2206578	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs2223622	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2328530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328532	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4357125	0.86[CHB][hapmap]
rs4429936	0.92[CHB][hapmap]
rs4710937	0.88[ASN][1000 genomes]
rs4712512	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4712513	0.86[CHB][hapmap]
rs4712518	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4712520	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4712527	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4712528	0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap]
rs4712531	0.82[AMR][1000 genomes]
rs4991654	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6456359	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6902661	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6907459	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6907897	0.86[CHB][hapmap]
rs6909467	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6918457	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6921014	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6928198	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs6928586	0.86[CHB][hapmap]
rs6935317	0.86[CHB][hapmap]
rs7739974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7748720	0.84[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]
rs7753519	0.86[CHB][hapmap]
rs7758129	0.88[JPT][hapmap]
rs7760894	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7763304	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7767133	0.82[EUR][1000 genomes]
rs7771213	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs9350263	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9368214	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9368215	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs9460524	0.86[CHB][hapmap]
rs9465831	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9465838	0.82[CHB][hapmap];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
E2F3	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)