SNP Report
Name | rs2328546   dbSNP |
---|---|
Location | chr:6,20657345 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1012625 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs1012636 | 0.82[AMR][1000 genomes] |
rs13220352 | 0.87[ASN][1000 genomes] |
rs1569660 | 0.92[CHB][hapmap];0.84[ASN][1000 genomes] |
rs2064320 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs2179551 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs2206577 | 0.84[CHB][hapmap] |
rs2206578 | 0.92[CHB][hapmap];0.87[JPT][hapmap] |
rs2223622 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs2328530 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2328532 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4357125 | 0.86[CHB][hapmap] |
rs4429936 | 0.92[CHB][hapmap] |
rs4710937 | 0.88[ASN][1000 genomes] |
rs4712512 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
rs4712513 | 0.86[CHB][hapmap] |
rs4712518 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs4712520 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
rs4712527 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4712528 | 0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap] |
rs4712531 | 0.82[AMR][1000 genomes] |
rs4991654 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6456359 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6902661 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6907459 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6907897 | 0.86[CHB][hapmap] |
rs6909467 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6918457 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6921014 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
rs6928198 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs6928586 | 0.86[CHB][hapmap] |
rs6935317 | 0.86[CHB][hapmap] |
rs7739974 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7748720 | 0.84[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes] |
rs7753519 | 0.86[CHB][hapmap] |
rs7758129 | 0.88[JPT][hapmap] |
rs7760894 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs7763304 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7767133 | 0.82[EUR][1000 genomes] |
rs7771213 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9350263 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
rs9368214 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs9368215 | 0.92[CHB][hapmap];0.80[ASN][1000 genomes] |
rs9460524 | 0.86[CHB][hapmap] |
rs9465831 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs9465838 | 0.82[CHB][hapmap];0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
E2F3 | Distal transcriptional regulation |
CDKAL1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014