SNP Report

Basic Infomation

Name	rs6907897 dbSNP
Location	chr:6,20580425
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 58)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474720	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1883640	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1997778	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2064320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2103682	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2179551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2206577	0.94[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2206578	0.94[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2223622	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328530	0.86[CHB][hapmap]
rs2328546	0.86[CHB][hapmap]
rs4336434	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4357125	0.84[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4429936	0.93[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs4710935	0.89[CEU][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712504	0.83[ASN][1000 genomes]
rs4712512	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712513	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712517	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712518	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712520	0.86[CHB][hapmap]
rs4991654	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456355	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456359	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs6902661	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903415	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6907459	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6907767	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6909467	1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs6918457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6921014	0.85[CHB][hapmap]
rs6923683	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6928198	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935317	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936705	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937578	0.90[ASN][1000 genomes]
rs6938955	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7739974	0.86[CHB][hapmap]
rs7744002	0.91[YRI][hapmap]
rs7753519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7758129	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs7760894	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs7763304	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7771213	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs9350255	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9350263	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9358352	0.90[ASN][1000 genomes]
rs9368208	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368214	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs9460520	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9460524	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9465800	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9465801	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9465812	0.85[YRI][hapmap]
rs9465831	1.00[CHB][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs978987	0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)