SNP Report
Basic Infomation
| Name | rs4429936 dbSNP |
|---|---|
| Location | chr:6,20527017 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012625 | 0.93[CHB][hapmap] |
| rs1569660 | 0.85[CHB][hapmap] |
| rs2064320 | 0.93[CHB][hapmap] |
| rs2179551 | 0.93[CHB][hapmap] |
| rs2206577 | 0.92[CHB][hapmap] |
| rs2206578 | 1.00[CHB][hapmap] |
| rs2223622 | 0.93[CHB][hapmap] |
| rs2328530 | 0.92[CHB][hapmap] |
| rs2328546 | 0.92[CHB][hapmap] |
| rs4357125 | 0.93[CHB][hapmap] |
| rs4516938 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4628090 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4712504 | 0.83[ASN][1000 genomes] |
| rs4712512 | 0.93[CHB][hapmap] |
| rs4712513 | 0.93[CHB][hapmap] |
| rs4712518 | 0.93[CHB][hapmap] |
| rs4712520 | 0.92[CHB][hapmap] |
| rs4712527 | 0.85[CHB][hapmap] |
| rs4991654 | 0.93[CHB][hapmap] |
| rs6456359 | 0.93[CHB][hapmap] |
| rs6902661 | 0.93[CHB][hapmap] |
| rs6907459 | 0.93[CHB][hapmap];0.82[JPT][hapmap] |
| rs6907767 | 0.85[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap] |
| rs6907897 | 0.93[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap] |
| rs6909467 | 0.93[CHB][hapmap] |
| rs6918457 | 0.93[CHB][hapmap] |
| rs6921014 | 0.92[CHB][hapmap] |
| rs6928198 | 0.93[CHB][hapmap] |
| rs6928586 | 0.93[CHB][hapmap];0.84[JPT][hapmap] |
| rs6935317 | 0.93[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap] |
| rs7739974 | 0.92[CHB][hapmap] |
| rs7753519 | 0.93[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap] |
| rs7758129 | 0.86[CHB][hapmap] |
| rs7760894 | 0.93[CHB][hapmap] |
| rs7763304 | 0.92[CHB][hapmap] |
| rs7771213 | 0.92[CHB][hapmap] |
| rs9350263 | 0.93[CHB][hapmap] |
| rs9368214 | 0.93[CHB][hapmap] |
| rs9368215 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs9460524 | 0.93[CHB][hapmap] |
| rs9465831 | 0.93[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| E2F3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014