SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012625	0.89[JPT][hapmap]
rs13220352	0.91[ASN][1000 genomes]
rs1569660	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[ASN][1000 genomes]
rs2064320	0.89[JPT][hapmap]
rs2179551	0.89[JPT][hapmap]
rs2206578	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2223622	0.89[JPT][hapmap]
rs2328530	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs2328532	0.81[ASN][1000 genomes]
rs2328546	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs4429936	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs4710937	0.92[ASN][1000 genomes]
rs4712512	0.89[JPT][hapmap]
rs4712518	0.89[JPT][hapmap]
rs4712520	0.92[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs4712527	0.85[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs4991654	0.89[JPT][hapmap]
rs6456359	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6902661	0.89[JPT][hapmap]
rs6907459	0.82[JPT][hapmap]
rs6909467	0.89[JPT][hapmap]
rs6918457	0.89[JPT][hapmap]
rs6921014	0.92[CHB][hapmap];0.94[ASN][1000 genomes]
rs6928198	0.89[JPT][hapmap]
rs6937578	0.81[ASN][1000 genomes]
rs7739974	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs7758129	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7760894	0.89[JPT][hapmap]
rs7763304	0.92[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7771213	0.92[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs9350263	0.81[JPT][hapmap]
rs9358352	0.81[ASN][1000 genomes]
rs9368214	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9465831	0.89[JPT][hapmap]
rs9465838	0.92[ASN][1000 genomes]
rs978987	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)