SNP Report
Name | rs4712527   dbSNP |
---|---|
Location | chr:6,20663335 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1012625 | 0.88[JPT][hapmap] |
rs1012636 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11968248 | 1.00[YRI][hapmap] |
rs13220352 | 0.89[ASN][1000 genomes] |
rs1569660 | 0.85[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes] |
rs2064320 | 0.88[JPT][hapmap] |
rs2179551 | 0.88[JPT][hapmap] |
rs2206578 | 0.84[CHB][hapmap];0.87[JPT][hapmap] |
rs2223622 | 0.88[JPT][hapmap] |
rs2328530 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2328532 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2328546 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4357125 | 0.86[CHB][hapmap] |
rs4429936 | 0.85[CHB][hapmap] |
rs4710937 | 0.90[ASN][1000 genomes] |
rs4712512 | 0.94[JPT][hapmap] |
rs4712518 | 0.88[JPT][hapmap] |
rs4712520 | 0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4712528 | 0.84[CEU][hapmap];0.83[JPT][hapmap] |
rs4712531 | 0.89[AMR][1000 genomes] |
rs4991654 | 0.88[JPT][hapmap] |
rs6456359 | 0.88[JPT][hapmap] |
rs6902661 | 0.88[JPT][hapmap] |
rs6907459 | 0.88[JPT][hapmap] |
rs6909467 | 0.88[JPT][hapmap] |
rs6918457 | 0.88[JPT][hapmap] |
rs6921014 | 0.92[CHB][hapmap];0.86[ASN][1000 genomes] |
rs6928198 | 0.88[JPT][hapmap] |
rs7739974 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7748720 | 0.82[CHD][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes] |
rs7758129 | 0.88[JPT][hapmap] |
rs7760894 | 0.88[JPT][hapmap] |
rs7763304 | 0.92[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes] |
rs7767133 | 0.82[EUR][1000 genomes] |
rs7771213 | 0.92[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes] |
rs9350263 | 0.87[JPT][hapmap] |
rs9350273 | 0.81[AMR][1000 genomes] |
rs9368214 | 0.88[JPT][hapmap] |
rs9368215 | 0.85[CHB][hapmap];0.87[CHD][hapmap];0.82[ASN][1000 genomes] |
rs9465831 | 0.88[JPT][hapmap] |
rs9465838 | 0.90[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CDKAL1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
RRAGD | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014