SNP Report

Basic Infomation

Name	rs2206578 dbSNP
Location	chr:6,20531530
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012625	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474720	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1569660	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1883640	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997778	0.90[ASN][1000 genomes]
rs2064320	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2103682	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2179551	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2223622	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2328530	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs2328546	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs4336434	0.92[ASN][1000 genomes]
rs4357125	0.92[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs4429936	1.00[CHB][hapmap]
rs4710935	0.90[ASN][1000 genomes]
rs4712504	0.93[ASN][1000 genomes]
rs4712512	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4712513	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs4712517	0.90[ASN][1000 genomes]
rs4712518	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4712520	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs4712527	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4991654	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6456355	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456359	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6902661	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6903415	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6907459	0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs6907767	0.92[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs6907897	0.94[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909467	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6918457	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6921014	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs6923683	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928198	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928586	0.95[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6935317	0.83[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6936705	0.92[ASN][1000 genomes]
rs6937578	0.87[ASN][1000 genomes]
rs6938955	0.90[ASN][1000 genomes]
rs7739974	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs7753519	0.94[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7758129	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7760894	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7763304	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7771213	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9350255	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9350263	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs9358352	0.87[ASN][1000 genomes]
rs9368208	0.90[ASN][1000 genomes]
rs9368214	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9368215	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs9460520	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9460524	0.81[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9465800	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9465801	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9465831	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9465838	0.82[CHB][hapmap]
rs978987	0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	Proximal transcriptional regulation
E2F3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)