SNP Report

Basic Infomation

Name	rs6903415 dbSNP
Location	chr:6,20532183
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012625	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474720	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1883640	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1997778	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2064320	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2103682	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2179551	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206577	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2206578	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2223622	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4336434	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4357125	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4710935	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712504	0.87[ASN][1000 genomes]
rs4712512	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712513	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712517	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712518	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4991654	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456355	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6456359	0.90[ASN][1000 genomes]
rs6902661	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907459	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6907767	0.90[ASN][1000 genomes]
rs6907897	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6909467	0.98[ASN][1000 genomes]
rs6918457	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923683	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6928198	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928586	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6935317	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936705	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937578	0.90[ASN][1000 genomes]
rs6938955	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753519	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7758129	0.89[ASN][1000 genomes]
rs7760894	0.87[ASN][1000 genomes]
rs9350255	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9350263	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9358352	0.90[ASN][1000 genomes]
rs9368208	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368214	0.90[ASN][1000 genomes]
rs9460520	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9460524	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9465800	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9465801	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9465831	0.88[ASN][1000 genomes]
rs978987	0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	Proximal transcriptional regulation
E2F3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)