SNP Report
Name | rs6928198   dbSNP |
---|---|
Location | chr:6,20580394 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1012625 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10223876 | 0.81[AFR][1000 genomes] |
rs1474720 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1569660 | 0.88[JPT][hapmap] |
rs1883640 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1997778 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2064320 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2103682 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2179551 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2206577 | 0.94[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2206578 | 0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2223622 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2328530 | 0.86[CHB][hapmap];0.83[JPT][hapmap] |
rs2328546 | 0.86[CHB][hapmap];0.88[JPT][hapmap] |
rs4336434 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4357125 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4429936 | 0.93[CHB][hapmap] |
rs4710935 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4710937 | 0.81[ASN][1000 genomes] |
rs4712504 | 0.87[ASN][1000 genomes] |
rs4712512 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4712513 | 1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4712517 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4712518 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4712520 | 0.86[CHB][hapmap];0.83[JPT][hapmap] |
rs4712527 | 0.88[JPT][hapmap] |
rs4991654 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6456355 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6456359 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6902661 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6903415 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6907459 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6907767 | 0.93[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6907897 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6909467 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs6918457 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6921014 | 0.85[CHB][hapmap];0.86[JPT][hapmap] |
rs6923683 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6928586 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6935317 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6936705 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6937578 | 0.95[ASN][1000 genomes] |
rs6938955 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7739974 | 0.86[CHB][hapmap];0.83[JPT][hapmap] |
rs7744002 | 0.91[YRI][hapmap];0.83[AFR][1000 genomes] |
rs7753519 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7758129 | 0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7760894 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs7763304 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs7771213 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs9350255 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9350263 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9358352 | 0.95[ASN][1000 genomes] |
rs9368208 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9368214 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs9368215 | 0.89[JPT][hapmap] |
rs9460520 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9460524 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes] |
rs9465800 | 0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9465801 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9465810 | 0.83[AFR][1000 genomes] |
rs9465812 | 0.85[YRI][hapmap] |
rs9465817 | 0.83[AFR][1000 genomes] |
rs9465831 | 1.00[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9465838 | 0.81[ASN][1000 genomes] |
rs978987 | 0.92[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
SOX4 | Distal transcriptional regulation |
CDKAL1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
IGHMBP2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014