SNP Report
Basic Infomation
| Name | rs4357125 dbSNP |
|---|---|
| Location | chr:6,20586203 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 59)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012625 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1474720 | 0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1883640 | 0.92[ASN][1000 genomes] |
| rs1997778 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2064320 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2103682 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2179551 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2206577 | 0.84[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2206578 | 0.92[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2223622 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2328530 | 0.86[CHB][hapmap] |
| rs2328546 | 0.86[CHB][hapmap] |
| rs4336434 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4429936 | 0.93[CHB][hapmap] |
| rs4710935 | 0.94[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4710937 | 0.81[ASN][1000 genomes] |
| rs4712504 | 0.87[ASN][1000 genomes] |
| rs4712512 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4712513 | 1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4712517 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4712518 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4712520 | 0.86[CHB][hapmap] |
| rs4712527 | 0.86[CHB][hapmap] |
| rs4991654 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6456355 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6456359 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs6902661 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6903415 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6907459 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6907767 | 0.93[CHB][hapmap];0.95[ASN][1000 genomes] |
| rs6907897 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6909467 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6918457 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6921014 | 0.86[CHB][hapmap] |
| rs6923683 | 0.92[ASN][1000 genomes] |
| rs6928198 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6928586 | 1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6935317 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6936705 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6937578 | 0.95[ASN][1000 genomes] |
| rs6938955 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7739974 | 0.86[CHB][hapmap] |
| rs7753519 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7758129 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs7760894 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7763304 | 0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7771213 | 0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs9350255 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9350263 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9358352 | 0.95[ASN][1000 genomes] |
| rs9368208 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9368214 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9460520 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9460524 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9465800 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9465801 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9465831 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs9465838 | 0.81[ASN][1000 genomes] |
| rs978987 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014