SNP Report
Basic Infomation
| Name | rs10223876 dbSNP |
|---|---|
| Location | chr:6,20595853 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10223680 | 1.00[EUR][1000 genomes] |
| rs12333229 | 0.89[AMR][1000 genomes] |
| rs12333291 | 0.89[AMR][1000 genomes] |
| rs13437555 | 0.89[AMR][1000 genomes] |
| rs16883916 | 0.89[AMR][1000 genomes] |
| rs16883944 | 0.89[AMR][1000 genomes] |
| rs28869917 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6908974 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs6928198 | 0.81[AFR][1000 genomes] |
| rs6928571 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs7744002 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7751682 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7764558 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9460525 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9460526 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9460530 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9465791 | 0.89[AMR][1000 genomes] |
| rs9465810 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9465812 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9465813 | 0.89[AMR][1000 genomes] |
| rs9465815 | 1.00[EUR][1000 genomes] |
| rs9465817 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9465824 | 0.89[AMR][1000 genomes] |
| rs9465828 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9465829 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014