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rVarBase
SNP Report
Basic Infomation
Name
rs10223680  
dbSNP
Location
chr:6,20595547
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10223876
1.00[EUR][1000 genomes]
rs28869917
0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744002
1.00[EUR][1000 genomes]
rs7751682
1.00[EUR][1000 genomes]
rs7764558
1.00[EUR][1000 genomes]
rs9460525
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9460526
0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9460530
1.00[EUR][1000 genomes]
rs9465810
1.00[EUR][1000 genomes]
rs9465812
1.00[EUR][1000 genomes]
rs9465815
1.00[EUR][1000 genomes]
rs9465817
1.00[EUR][1000 genomes]
rs9465828
1.00[EUR][1000 genomes]
rs9465829
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)