SNP Report
Basic Infomation
| Name | rs7748720 dbSNP |
|---|---|
| Location | chr:6,20689945 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012636 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10440832 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2328530 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs2328532 | 0.80[AMR][1000 genomes] |
| rs2328546 | 0.84[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs4712512 | 0.82[JPT][hapmap] |
| rs4712520 | 0.84[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs4712527 | 0.82[CHD][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes] |
| rs4712528 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4712531 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6908425 | 0.85[CEU][hapmap];0.92[CHB][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6921014 | 0.84[CHB][hapmap] |
| rs7739974 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs7763304 | 0.84[CHB][hapmap] |
| rs7771213 | 0.84[CHB][hapmap] |
| rs9350273 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014